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"웹2024년 7월 2일 · The genome of strain SI-3 was sequenced using PacBio RS II system and assembled using HGAP assembler. rRNAs and tRNAs were predicted using Barranp 0.4.2 … " - Barranp

Barranp

웹An icon used to represent a menu that can be toggled by interacting with this icon. Barrnap predicts the location of ribosomal RNA genes in genomes.It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S),metazoan mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output.It uses the new nhmmertool that comes with HMMER 3.1 … 더 보기 Barrnap does not do anything fancy. It has HMM models for each different rRNA gene.They are built from full length seed alignments. 더 보기 Barrnap is designed to be a substitute for RNAmmer.It was motivated by my desire to remove Prokka'sdependency on RNAmmer which is encumbered by a free-for-academic sign … 더 보기

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